Yes you can apply for various scholarships provided that it must have been provided by the college or university in which you are taking admission for pursuing master of science course. I am mentioning below the name of the scholarships which are accepted in colleges for Master of Science students in India in their first year:

1. Indira Gandhi scholarship for single girl child
2. Postgraduate merit scholarship for university rank holders
3. scientist scheme
4. Narotam sekhsaria scholarship programme
5. Kishore vaigyanik protsahan Yojana
6. Dr KS Krishnan research associate
7. IAS Bangalore Summer Research scholarship
8. Dr APJ Abdul Kalam summer training program scholarship.

Read More about Scholarship: https://www.google.com/url?sa=t&source=web&rct=j&url=https://school.careers360.com/articles/scholarships-in-india/amp&ved=2ahUKEwjZ1Nvbjf_0AhUySWwGHQdVDBIQtwJ6BAgDEAE&usg=AOvVaw0juYkTdA5QbRu0d-I6cEgK