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Yes, you will be eligible for JOSAA 2025 if you meet the following criteria:
Regarding the highest individual marks for 5 subjects, JOSAA considers the best five subjects from your qualifying exam. This means that your NIOS board marks will be considered along with your ISC board marks to determine your overall percentage.
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Therefore, you can use the marks from both your ISC board and NIOS board exams to calculate your overall percentage and determine your eligibility for JOSAA counseling.
I hope this information helps you.
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