hello there

i don't think you will face much problem with that because in your jmi application form you have filled yourself as a pwd student .jee mains and jamia counselling are quite separate ones .but be sure you can provide right documents for your pwd category on the day of counselling .however you can also contact the jamia admissions helpline to know more

https://www.jmi.ac.in/upload/Criteria-2/2.1.3/prospectus/2.1.3p.pdf

here is the reservation criteria for pwd candidates

best of luck