• PGIMER, Chandigarh
• Adesh University, Punjab
• Chaudhury Charan Singh University, Meerut
• Chettinad Academy of Research and Education, kanchipuram
• Chhatrapati Shahu Ji Maharaj University, Kanpur
• Dolphin Institute of Biomedical and Natural Sciences, Dehradun
• Himalayan university, Itanagar
• Institute of Management and Technical Studies, Noida
• Integral University, Lucknow
• ITM University, Gwalior
• Mahatma Gandhi Medical College and Research Institute, Mumbai
• Manipal Academy of Higher Education, Manipal
• MM Institute of Medical Sciences and Research , Ambala
• Pravara Institute of Medical Sciences, Ahmednagar
• Rama University, Kanpur
• Sai Institute of paramedical and Allied Science, Dehradun
• Santosh Medical College and Hospital, Ghaziabad
• SGT University, Gurgaon
• Shradhha University, Noida
• Singhania University, Rajasthan

Hii aspirants 

Here are list of some top colleges for msc in microbiology. These are

• The Oxford College of Science Bangalore.
• University of Lucknow.
• Barkatullah University, Bhopal.
• Lady Brabourne College, Kolkata.
• IIT Jaipur.
• MIT

• Fergusson College Pune.
• St. Xavier's College Kolkata.

I hope my answer Will help you out

Good luck